Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs12654066 | chr5:140523774 | C/T | 1.72E-5 | 177 | 15.95 | 14.33 | 7.85 | KM Plot |
| PAAD | rs12663161 | chr6:26958784 | C/T | 0.000151 | 178 | 5.03 | 16.65 | 15.37 | KM Plot |
| PAAD | rs12664426 | chr6:27079920 | C/T | 1.36E-9 | 177 | 15.3 | 18.73 | 2.2 | KM Plot |
| PAAD | rs12669550 | chr7:157403743 | G/A | 5.75E-5 | 177 | 14.97 | 15.67 | 4.13 | KM Plot |
| PAAD | rs12674789 | chr8:1815639 | A/G | 3.49E-7 | 171 | 16.15 | 13.03 | 4.27 | KM Plot |
| PAAD | rs12800028 | chr11:67403285 | A/G | 2.81E-5 | 173 | 14.58 | 16.05 | 7.77 | KM Plot |
| PAAD | rs12816641 | chr12:104662378 | A/C | 7.54E-13 | 178 | 1.37 | 15.8 | 15.43 | KM Plot |
| PAAD | rs1282668 | chr11:74644336 | A/G | 0.000114 | 177 | 4.27 | 15.57 | 15.57 | KM Plot |
| PAAD | rs1282675 | chr11:74585375 | T/C | 0.000114 | 178 | 4.27 | 15.5 | 15.57 | KM Plot |
| PAAD | rs1282677 | chr11:74584145 | G/T | 0.000132 | 177 | 4.27 | 15.43 | 15.57 | KM Plot |
| PAAD | rs12920562 | chr16:68737512 | C/T | 7.18E-5 | 175 | 16.17 | 14.33 | 5.97 | KM Plot |
| PAAD | rs1293467 | chr6:44769204 | C/G | 0.000157 | 178 | 12.63 | 16.13 | 16.22 | KM Plot |
| PAAD | rs1293598 | chr6:44869258 | T/C | 8.88E-5 | 178 | 11.98 | 16.17 | 16.07 | KM Plot |
| PAAD | rs1293600 | chr6:44869338 | A/G | 0.000138 | 176 | 11.98 | 16.17 | 16.07 | KM Plot |
| PAAD | rs12967678 | chr18:12805388 | G/A | 0 | 176 | 15.43 | 16.27 | 1.03 | KM Plot |